- NCBI - National Centre for Biotechnology Information - ( www.ncbi.nlm.nih.gov/Genbank )
- TIGR Database - ( www.tigr.org/tdb/mdb/mdbcomplete.html
) - BLAST - ( www.ncbi.nlm.gov/BLAST/ )
- FASTA Program - ( www.ebi.ac.uk/fasta33/ )
- Pubmed - ( www.ncbi.nlm.gov/PubMed/ )
- Text Searches - ( http://chaos.swmed.edu/etblast/index.html
) - Linkage Tools - ( http://linkage.rockefeller.edu )
- Phylip - ( http://evolution.genetocs.washington.edu/phylip.html
) - Tree of Life - ( http://tolweb.org/tree/phylogeny.html
- Array Express - ( http://www.ebi.ac.uk/arrayexpress/ )
- Shotgun sequencing - ( www.phrap.org )
- Single Nucleotide Substitution - ( http://droog.mht.washington.edu/PolyPhred.html
) - Genome Annotation - ( http://compbio.ornl.gov/gac/ )
- Genie - Locate Genes - ( www.fruitfly.org/seq_tools/genie.html
) - Software List - ( www.softberry.com )
- Genetic Variation - ( www.genome.gov )
- Virtual Cell - ( www.nrcam.uchc.edu
) - SWISS-PROT - ( http://us.expasy.org )
- PIR - ( http://pir.georgetown.edu )
- OWL Database - ( www.hgmp.mrc.ac.uk/Bioinformatics/Databases/owl-help.html
) - PROSITE - ( www.expasy.ch/prosite
) - Protein Family Database (Pfam) - ( www.sanger.ac.uk/software/pfam
) - Protein Data Bank - ( www.pdb.org )
- PDBSum - ( http://www.ebi.ac.uk/thornton-srv/databases/pdbsum/
) - CATH - ( www.biochem.ucl.ac.uk/bsm/cath/
) - SCOP - ( http://scop.mrc-lmb.cam.ac.uk/scop/
) - EMBL - ( www.ebi.ac.uk/embl )
- UniGene - ( www.ncbi.nlm.nih.gov/UniGene/ )
- Sacchromyces Genome Database (SGD) - (
genome-www.standford.edu/Sacchromyces/ ) - Genome Databases - ( www.ebi.ac.uk/genomes/ )
- Eukaryotic Genome Annotations - Ensembl - ( www.ensembl.org )
- Genome Analysis - ( http://bioinfo.mbby.yale.edu/genome
) - Cluster of Orthologous Group Databases - ( www.ncbi.nlm.nih.gov/COG )
- Tumor Expression Data base - ( http://llmpp.nih.gov/lymphoma/ )
- Human Gene Data base - GeneCards - ( http://bioinformatics.weizmann.ac.il/cards/
) - KEGG - Kyoto Encyclopedia of Genes and Genomes - ( www.genome.ad.jp/kegg/ )
- Protein Sequencing - SAPS - ( http://www.isrec.isb-sib.ch/software/SAPS_form.html
) - DotPlot - ( www.accelrys.com/gcg )
- Codon Usage analysis - ( www.hgmp.mrc.ac.uk/Registered/Option/codonw.html
) - ProteinProspector - ( http://prospector.ucsf.edu/ )
- Signal Scan - Pattern searches - ( http://bimas.dcrt.nih.gov/molbio/signal/
) - Search engine - Biological, Agricultural and Medical Sciences - ( http://infomine.ucr.edu/cgi-bin/search?bioag
) - Search engine - Biolinks - ( www.biolinks.com )
- Searcg engine list - ( www.searchengineguide.com )
- Database retrieval system - DBGET - ( www.genome.ad.jp/dbget )
- Biology workbench - ( http://workbench.sdsc.edu/ )
- BioRs - Biological data retrieval system - ( http://mips.gsf.de/projects/biors )
- Motif search - Meme/ Mast system - ( http://meme.sdsc.edu/meme/website/intro.html
) - MORGAN - Gene Finding - ( www.tigr.org/~salzberg/morgan.html
) - Secondary structure Prediction - nnPredict - ( http://www.cmpharm.ucsf.edu/~nomi/nnpredict-instrucs.html
) - GeneFinder - ( http://pir.georgetown.edu/gfserver/genefind.html/
) - Genome Databases - GOLD - ( http://wit.integratedgenomics.com/GOLD/
) - Completed Genomes - ( www.ebi.ac.uk/genomes/ )
- Genomic Biology - ( http://www.ncbi.nlm.nih.gov/Genomes/
) - Pathogenic and Model Organisms genomes - ( www.sanger.ac.uk/Projects/Microbes/
) - Human Genome - ( www.genome.gov )
- Human Genome Project - ( www.ornl.gov/TechResources/Human_Genome/
) - RESTRICTION MAPS - RFLP - ( http://pgrc.ipk-gastersleben.de/rflp/rflp.html
) - STS - ( www.ncbi.nlm.nih.gov/dbSTS/ )
- EST - ( www.ncbi.nlm.nih.gov/dbEST )
- RH MAPPER - ( www.hgmp.mrc.ac.uk/Registered/Option/rhmapper.html
) - SEQUENCE ASSEMBLY TOOLS - Genome Sequencing - ( www.geospiza.com/products/tools/index.htm)
- Phrap - overlapping identified - ( www.geospiza.com/products/tools/phrap.htm
) - Phred - ( www.geospiza.com/products/tools/phred.htm
) - overlapping - Assembler 2.0 - ( www.tigr.org/software/assembler/
) - CAP3 - ( http://deepc2.zool.iastate.edu/aat/cap/cap.html
) - Sequencer - Sequencing - ( www.genecodes.com )
- Accelrys softwares - ( www.accelrys.com/products/gcg_wisconsin_package/
) - EMBOSS Programms - ( www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/
) - Genematcher2 - Gap opening and penalty analysis - ( www.paracel.com/products/gm2.html
) - Local Alignment - Blitz - ( www.ebi.ac.uk/searches/blitz_input.html
) - Local Alignment - SSearch - ( www.accelrys.com/products/seqweb/program_list.html
) - Multiple Sequence Alignment - ClustalW - ( www.ebi.ac.uk/clustalw/ )
- MSA Program - ( www.psc.edu/general/software/packages/msa
) - Pileup - ( www.accelrys.com/products/gcg_wisconsin_package/program_list.html#PileUp
) - Pattern Induced Multiple Alignment (PIMA) - ( http://bioweb.pasteur.fr/seqanal/inter-faces/pima-simple.html
) - Multalign - ( http://cbrg.inf.ethz.ch/Server/MultAlign.html
) - Dialign - ( www.gsf.de/biodv/dialign.html )
- Serial Alignment by Genetic Algorithms (SAGA) - ( http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/saga_home_page.html
) - Parallel Prrn - ( http://prrn.ims.u-tokyo.ac.jp/ )
- Hmmt - ( www.psc.edu/general/software/packages/hmmer/manual/hmmt.html
) - BlockMaker - ( www.blocks.fhcrc.org/blockmkr/make_blocks.html
) - PHYLOGENETICS - MP - PHYLIP DNAPARS - ( http://bioweb.pasteur.fr/cgi-bin/seqanal/dnapars.pl
) - ML - FastDNAml - ( http://bioweb.pasteur.fr/seqanal/interfaces/fastdnaml-simple.html
) - PhyloBLAST - ( www.pathogenomics.bc.ca/phyloBLAST/
) - PHYLIP - Phylogeny Inference Package - ( http://evolution.genetics.washington.edu/phylip.html
) - Phylogenetic Analysis Using Parsimony (PAUP) - ( http://paup.csit.fsu.edu )
- Phylogenetic Analysis by Maximum Likelihood - PAML - ( http://abacus.gene.ucl.ac.uk/software/paml.html
) - Phylogenetic tree viewer - Tree View - ( http://taxonomy.zoology.gla.ac.uk/rod/treeview.html
) - NJplot - ( http://pbil.univ-lyon1.fr/software/njplot.html
) - Single Nucleotide Polymorphisms searches - ( www.ebi.ac.uk/snpfasta3/index.html
) - Prss Program - ( http://fasta.bioch.virginia.edu/fasta/prss.html
) - FASTA - ( http://alpha10.bioch.virginia.edu/fasta/
) - SWAT - ( http://www.genome.washington.edu/UWGC/analysistools/Swat.cfm
) - BCM search Launcher - ( http://searchlauncher.bcm.tmc.edu )
- Sequence Alignment and Modeling system - SAM - ( www.cse.ucsc.edu/research/compbio/sam.html
) - meta-MEME - ( http://metameme.sdsc.edu/ )
- Gene Prediction - GeneMark - ( www.ebi.ac.uk/genemark/ )
- Genefinding - GRAIL - ( http://compbio.ornl.gov/Grail-1.3/
) - FindPatterns - ( www.accelrys.com/products/gcg_wisconsin_package/program_list.html#Findpatterns
) - Frames - ( www.accelrys.com/products/gcg_wisconsin_package/
) - Mac Vector 6.5 - ( http://www.sxst.it/oxm_mcv.htm )
- Sequencher - ( http://www.genecodes.com/index.html
) - Testcode - ( http://www.accelrys.com/products/gcg_wisconsin_package/
) - Procrustes - ( http://hto-13.usc.edu/software/procrustes/
) - HMMgene - Prediction in anonymous DNA - ( www.cbs.dtu.dk/services/HMMgene/
) - Glimmer - ( www.tigr.org/software/glimmer/
) - Veil System - ( www.tigr.org/~salzberg/veil.html
) - GENSCAN - ( http://genes.mit.edu/GENSCAN.html )
- Genie - ( http://www.fruitfly.org/seq_tools/genie.html
) - SIGNAL SCAN - ( www.cbs.umn.edu/software/sigscan.html
) - GenLang - ( www.cbil.upenn.edu/genlang/genlang_home.html
) - GeneParser - ( http://beagle.colorado.edu/~eesnyder/GeneParser.html
) - GeneID - ( www1.imim.es/software/geneid/asd.html )
- PolyA Site Prediction - ( http://125.itba.mi.cnr.it/~webgene/wwwHC_polya.html
) - HCtata - ( http://125.itba.mi.cnr.it/~webgene/wwwHC_tata.html
) - MatInspector - ( www.genomatrix.de/cgi-bin/matinspector/matinspector.pl
) - Signal sequence search - ( http://bimas.dcrt.nih.gov/molbio/signal/
) - Tfsitescan - ( www.ifti.org/cgi-bin/ifti/Tfsitescan.pl
) - FramePlot - ( http://watson.nih.go.jp/~jun/cgi-bin/frameplot-3.0b.pl
) - ORF Finder - ( www.ncbi.nlm.nih.gov/gorf/gorf.html
) - Exon Prediction Program - Perceval - ( http://compbio.ornl.gov/grailexp/gxpfaq2.html
) - Repetitive Elements Identification - RepeatMasker - ( http://ftp.genome.washington.edu/cgi-bin/RepeatMasker
) - tRNA gene Prediction - ( www.genetics.wustl.edu/eddy/tRNAscan-SE/
) - Microarray - Image processing tool - ( www.scanalytics.com/product/microarray/index.html
) - Image processing tool - Genepix - ( www.axon.com/GN_GenePixSoftware.html
) - NetAffx - ( www.affymetrix.com/analysis/index.affx
) - Xcluster - ( www.cbil.upenn.edu/epcondb/servlet/sv?page=xcluster
) - GEPAS - ( http://gepas.bioinfo.cnio.es/tools.html
) - Serial Analysis of Gene Expression (SAGE) - ( www.sagenet.org )
- SAGE (NCBI) - ( www.ncbi.nlm.nih.gov/SAGE/ )
- PRIMARY STRUCTURE ANALYSIS - PROWL - ( http://prowl.rockefeller.edu/aainfo/contents.htm
) - PROCHECK - ( www.biochem.ucl.ac.uk/~roman/procheck/procheck.html
) - Calcium Binding Protein Library - ( http://structbio.vanderbilt.edu/cabp_database/cabp.html
) - Molecular Modeling Database (MMDB) - ( www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml
) - VIEWERS - Cn3D - ( www.ncbi.nlm.nih.gov/Structure/CN3-D/cn3-D.shtml
) - Rasmol - ( www.umass.edu/micobio/rasmol/ )
- SWISS-PDB Viewer - ( http://us.expasy.org/spdbv/ )
- Kinemages - ( http://kinemage.biochem.duke.edu/kinemage/kinemage.php
) - STRUCTURE ALIGNMENT - VAST - ( www.ncbi.nlm.nih.gov/Structure/VAST/vastsearch.html
) - DALI - ( www2.ebi.ac.uk/dali/ )
- Conserved Domain Database (CDD) - ( www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml
) - SMART - Simple Modular Architecture Research Tool ) - ( http://smart.embl-heidelberg.de/ )
- Conserved Domain Archietecture Retrrieval Tool ( CDART) - ( www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgi?cmd=rps
) - Ligplot - ( www.biochem.ucl.ac.uk/bsm/ligplot/ligplot.html
) - EXPASY TOOLS - ( www.expasy.org )
- PROTEIN IDENTIFICATION - AACompIdent - ( http://us.expasy.org/tools/aacomp/
) - TagIdent - ( http://us.expasy.org/tools/tagident.html
) - PeptIdent - ( http://us.expasy.org/tools/pepident.html
) - MultiIdent - ( http://us.expasy.org/tools/multiident/
) - AAcompsim - ( http://us.expasy.org/tools/aacsim
) - FindPept - ( http://ca.expasy.org/tools/findpept.html
) - PROPSEARCH - ( www.infobiosud.univmontp1.fr/SERVEUR/PROPSEARCHpropsearch.html
) - Pepsea - http://195.41.108.38/PepSeaIntro.html
) - PepMAPPER - ( http://wolf.bms.umist.ac.uk/mapper/
) - Mascot search - ( www.matrixscience.com/cgi/index.pl?page=/search_form_select.html
) - Peptide Search - ( www.mann.embl-heidelberg.de/GroupPages/PageLink/peptidesearchpage.html
) - Transmembrane region Prediction - TMAP - ( www.mbb.ki.se/tmap/ )
- TMHMM - ( www.cbs.dtu.dk/services/TMHMM/
) - TMPRED - ( www.ch.embnet.org/software/TMPRED_form.html
) - TopPred2 - ( http://bioweb.pasteur.fr/seqanal/interfaces/toppred.html
) - PHDhtm - ( http://www.embl-heidelberg.de/predictprotein/Dtab/phd_htm.html
) - DAS - ( www.sbc.su.se/~miklos/DAS/ )
- ComputePI/Mw - ( http://ca.expasy.org/tools/pi_tool.html
) - PeptideMass - ( www.expasy.org/tools/peptide-mass.html
) - SAPS - ( www.isrec.isb-sib.ch/software/SAPS_form.html
) - Protparam - ( http://ca.expasy.org/tools/protparam.html
) - Protscale - ( http://ca.expasy.org/cgi-bin/protscale.pl
) - PHD - ( www.embl-heidelberg.de/predictprotein/
) - PEST - ( www.icnet.uk/LRITu/projects/pest/
) - PESTfind - ( http://embl1.bcc.univie.ac.at/embnet/tools/bio/PESTfind/
) - Coils - ( www.ch.embnet.org/software/COILS_form.html
) - Paircoil - ( http://nightingale.lcs.mit.edu/cgi-bin/score
) - MultiCoil - ( http://nightingale.lcs.mit.edu/cgi-bin/multicoil
) - GOR Method - ( http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_gor4.html
) - NNmethod - SIMPA96 - ( http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_simpa96.html
) - nnPredict Method - Neural network method - ( http://www.cmpharm.ucsf.edu/~nomi/nnpredict.html
) - Neural network method - HNN - ( http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_nn.html
) - PSA - ( http://bmerc-www.bu.edu/psa/request.html
) - PsiPred - ( http://bioinf.cs.ucl.ac.uk/psipred/
) - Self Optimized Prediction Method - (SOPMA) - ( http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_sopma.html
) - Profilescan - ( http://hits.isb-sib.ch/cgi-bin/PFSCAN/
) - FrameProfilescan - ( www.isrec.isb-sib.ch/software/PFRAMESCAN_form.html
) - PileUp - ( http://biobase.dk/gcgmanual/pileup.html
) - LineUp - ( http://biobase.dk/gcgmanual/lineup.html
) - Pretty - ( http://biobase.dk/gcgmanual/pretty.html
) - ProfileMake - ( http://biobase.dk/gcgmanual/profilemake.html
) - ProfileSearch - ( http://biobase.dk/gcgmanual/profilesegments.html
) - ProfileGap - ( http://biobase.dk/gcgmanual/profilegap.html
) - HmmerIndex - http://biobase.dk/gcgmanual/hmmerindex.html
) - HmmerFetch - ( http://biobase.dk/gcgmanual/hmmerfetch.html
) - Motifs - ( http://biobase.dk/gcgmanual/motifs.html
) - Conserved Pattern search - Pratt - ( www.ebi.ac.uk/pratt/ )
- Alignmed Segment Statistical Evaluation (ASSET) - ( http://bip.weizmann.ac.il/software/sg_software/asset.html
) - Motif search - Hits - ( http://hits.isb-sib.ch/ )
- MEME - ( http://meme.sdsc.edu/meme/website/intro.html
) - Gibbs - ( http://bayesweb.wadsworth.org/gibbs/gibbs.html
) - ProDom - ( http://prodes.toulouse.inra.fr/prodom/2002.1/html/form.php?typeform=SPTR
) - PRINTS - ( http://bioin.man.ac.uk/dbbrowser/PRINTS/
) - Pscan - ( www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/pscan.html
) - InterPro - ( www.ebi.ac.uk/interpro )
- STRUCTURE PREDICTION - MaxHom - ( www.embl-heidelberg.de/predictprotein/predictprotein.html
) - Consensus tool - ( www.bork.embl-heidelberg.de:8080/Alignment/consensus.html
) - MODELLER - http://guitar.rockefeller.edu/modeller/modeller.html
) - SWISS-MODEL - ( www.expasy.org/swissmod/SWISSMODEL.html
) - 123-D+ - ( http://123-D.ncifcrf.gov/123-D+.html
) - LIBRA I - ( www.ddbj.nig.ac.jp/htmls/E-mail/libra/LIBRA_I.html
) - TOPITS - ( http://cubic.bioc.columbia.edu/predictprotein
) - Threader - ( http://bioinf.cs.ucl.ac.uk/threader/threader.html
) - ROSETTA PREDICTION - ( www.bioinfo.rpi.edu/~bystrc/hmmstr/server.php
) - Petra - ( www-cryst.bioc.cam.ac.uk/cgi-bin/cgiwrap/charlotte/pet.cgi )
- Inter residue contact prediction - PDGCON - ( www.pdg.cnb.uam.es:8081/pdg_contact_pred.html
) - CORNET - ( http://prion.biocomp.unibo.it/cornet.html
) - Interstrand contact prediction - AGADIR - ( http://embl-heidelberg.de/Services/serramp/agador/agador-start.html
) - PROTEIN FUNCTION - HNB network : ( http://dag.embl-heidelberg.de/hnb_cgi/show_overview_page.pl?MenuPath=%2Ftool_index
) - GeneQuiz : ( http://bric.postech.ac.kr/seminar/kjh/GeneQuiz_biowave/tsld001.htm
) - EXPASY Translation Tool - ( http://ca.expasy.ch/tools/dna.html
) - Transeq - ( www.ebi.ac.uk/emboss/transeq )
- Backtranslation - ( www.entelechon.com/eng/backtranslation.html
) - TECHNIQUES IN PROTEOMICS - 2D PAGE - ( http://us.expasy.org/ch2d/ )
- HEART- 2D PAGE - ( http://userpage.chemie.fu-berlin.de/~pleiss/dhzb.html
) - Melanie 3 - ( http://us.expasy.org/melanie )
- Protein Prospector - ( http://prospector.ucsf.edu )
- Database of Interacting Proteins - DIPTM - ( http://dip.doe-mbi.ucla.edu )
- POST TRANSLATIONAL MODIFICATION - PSORT - ( http://psort.nibb.ac.jp )
- SignalP - ( www.cbs.dtu.dk/services/SignalP/
) - ChloroP - ( www.cbs.dtu.dk/services/ChloroP/
) - TargetP - ( www.cbs.dtu.dk/services/TargetP/
) - Mitochondrial targets - Mitoprot II - ( http://bioinformer.ebi.ac.uk/newsletter/archieves/2/mitoprotii.html
) - Predotar - ( www.inra.fr/predotar
) - NetOGlyc - ( www.cbs.dtu.dk/services/NetOGlyc/
) - Big-PI Predictor - ( http://mendal.imp.univie.ac.at/sat/gpi/gpi_server.html
) - NetPhos - ( www.cbs.dtu.dk/services/NetPhos/
) - FindMod - ( http://us.expasy.org/tools/findmod/
) - GlycoMod - ( http://us.expasy.org/tools/glycomod/
) - Delta Mass - ( www.abrf.org/index.cfm/dm.home
) - Scansite - ( http://scansite.mit.edu
) - PATHWAYS - Regulon DB - ( www.cifn.unam.mx/Computational_Genomics/regulondb/
) - WIT - ( http://wit.mcs.anl.gov/WIT2/ )
- UM BBD - ( http://umbbd.ahc.umn.edu )
- EcoCyc - ( www.ecocyc.org )
- MetaCyc - ( http://biocyc.org/metacyc )
- Enzymes and Metabolic Pathways - ( http://emp.mcs.anl.gov )
- BRITE - ( www.genome.ad.jp/brite
) - GeNet - ( www.csa.ru/Inst/gorb_dep/inbios/genet/genet.htm
) - GenePath - ( http://magix.fri.uni-lj.si/genepath
) - Cell Signalling Networks Database ( CSNDB) - ( http://geo.nihs.go.jp/csndb/ )
- GenMAPP - ( www.genmapp.org )
- BioMiner- www.zbi.uni-saarland.de/chair/projects/BioMiner/index.shtml
) - Signalling Pathway Database (SPAD) - ( www.grt.kyushu-u.ac.jp/spad/ )
- GSCope - ( http://gscope.gsc.riken.go.jp )
- Pathway Studio - ( www.ariadnegenomics.com/products/pathway.html
) - Pathtracker - ( http://ocimumbio.com/products/products_pt.htm
) - Metabolic Networks - Fractal Genomics - ( www.fractalgenomics.com/technology/index.html
) - Metabolic control Analysis - Gepasi - ( www.gepasi.org/gepasi.html )
- Winscamp - ( www.cds.caltech.edu/~hsauro/Scamp/scamp.htm
) - SIMULATION OF CELLULAR ACTIVITIES - E-Cell - ( www.e-cell.org/ )
- Virtual Cell - ( www.nrcam.uchc.edu/index.html )
- BIOLOGICAL MARKUP LANGUAGES - CellML - ( www.ce..ml.org/ )
- Bioinformatic Sequence Markup Language (BSML) - ( www.labbook.com/products/xmlbsml.asp
) - Biopolymer Markup Language (BIOML) - ( www.bioml.com/ )
- Chemical Markup Language (CML) - ( www.xml-cml.org/ )
- Gene Expression Markup Language (GEML) - ( www.rosettabio.com/products/conductor/geml/default.htm
) - GeneXML - ( www.ncgr.org/genex/genexml.html
) - General Feature Format (GFF) - ( www.sanger.ac.uk/Software/formats/GFF/
) - OMG's Life Sciences Project - ( www.omg.org/homepage/lsr/ )
- eXtensible Multi Dimensional Simulator ( XMDS) - ( www.physics.uq.edu.au/xmds/ )
- Extensible Scientific Interchange Language - ( www.cacr.caltech.edu/SDA/xsil/
) - Ligand Protein Data Base (LPDB) - ( http://lpdb.scripps.edu/ )
- Standard Genetic Code - ( http://micro.nwfsc.noaa.gov/protocols/genecode.html
) - Finding siRNA in m-RNA - siRNA - ( www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/sirna.html
) - DOCKING - Biognostik - ( www.biocan.com/mbio/antisens.htm
) - Soma Logic - ( www.somalogic.com )
- Aptamer database - ( http://aptamer.icmb.utexas.edu/ )
- SELEX - ( www.archemix.com/tech_aptsel.html
) - Affymax - ( www.affymax.com )
- Selectide - ( www.selectide.com )
- Lion Biosciences - ( www.lionbiosciences.com )
- Available Chemicals Directory (ACD) - ( www.mdl.com )
- Cambridge Structural Database (CSD) - ( www.ccdc.cam.ac.uk/prods/csd/csd.html
) - Comprehensive Medicinal Chemistry database (CMC) - ( http://joel.mdli.com/products/knowledge/medicinal_chem/index.jsp
) - World Drug Index (WDI) - ( www.daylight.com/daycgi/wdi/ )
- PROCHECK - ( www.biochem.ucl.ac.uk/~roman/procheck/procheck.html
) - G-Protein coupled Receptors - ( www.gpcr.org/7tm/ )
- ClogP - ( www.biobyte.com/bb/prod/clogp40.html
) or ( www.daylight.com/daycgi/clogp ) - Conformers - ( www.accelrys.com/cerius2/conformers.html
) - Rubicon - ( www.daylight.com/products/rubicon.html
) - DISCOtech - ( www.tripos.com/sciTech/inSillicoDisc/pharmaPerception/discotech.html
) - Oxford Molecular tool - oxmol - ( www.accelrys.com/about/oxmol.html
) - Molecular Graphics - ( http://scsg9.unige.ch/fln/eng/toc.html
) - Molecular Modelling toolbox - ( http://webnet.mednet.gu.se/chemistry/molmod/
) - XED - ( www.ch.cam.ac.uk/SGTL/xed/ )
- AutoDock - ( www.scripps.edu/pub/olson-web/doc/autodock/
) - Dock - ( http://dock.compbio.ucsf.edu/ )
- LUDI - ( http://www.accelrys.com/cerius2/c2ludi.html
) - ADME - ( www.accelrys.com/pharma/cheminformatics/adme.html
) - TOPKAT - ( www.accelrys.com/products/topkat/
) - DDBJ - ( www.ddbj.nig.ac.jp )
- MIPS ALERT - ( www.mips.biochem.mpg.de/mips/programs/alert.html)
- WHATIF SERVER - ( http://swift.cmbi.kun.nl/WIWWWI/ )
- Bioinformatic Harvester III (beta) - ( http://harvester.fzk.de/harvester/
)
Zoology in the Classroom - is a blog for teachers and students of zoology. I have been teaching as Zoology teacher for the last 30 years. I post the notes or handouts that I supply to my students in my classroom. Hope this will benefit Zoology fraternity
Thursday, January 22, 2015
BIOINFORMATIC WEBSITE LINKS
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